Jon,
I to am considering the Atlas Nail base for my roof. I'll be applying it as follows: 1x base sheathing over my common rafer, major purlin roof system, then vapor barrier, then Atlas Vent R, then metal roofing. I'm going to have a catherdral ceiling, as i'm guessing you are, and my local building inspector passed my plan for 5.5" Atlas Vent-R for an R value of 28.6.
I'll be studding my frame with 2x4's from the inside (between the timbers). This only leaves me with 3" reveal on my 7" timbers and completely buries many of my braces, but makes wiring easy and allows me to enclose the frame quickly by being able to nail up my rough sawn 1x base sheathing directly to the outside of the frame (like you would a barn). I'll be insulating my walls with HP R-13 fiberglass bats vs. the standard r11 to make up for the "low" R in the roof.
Personally, I don't like the super air tightness you get from using SIP's all around. It requires the need for an active venilation system to keep clean air in the house. Not to mention, bugs love to live in the stuff. I'd prefer my envelope to be a bit less efficient, spend a little more on heat ( I burn my own wood anyway) in the winter and not have to persuade clean air to circulate thru my house.